# This package is usable both as a library and as a command-line tool. Upstream
# seems to consider the command-line tool to be the primary interface, so we
# use application naming guidelines.
Name:           spec2nii
Version:        0.8.2
Release:        %autorelease
Summary:        Multi-format in vivo MR spectroscopy conversion to NIFTI

# The entire source is BSD-3-Clause.
#
# Per spec2nii/GE/VESPA_LICENSE, “elements of ge_pfile.py, ge_read_pfile.py and
# ge_hdr_fields.py are taken from or adapted from the VESPA project” under a
# license which is also BSD-3-Clause.  From LICENSE:
#
#   This software includes third party open source software components from the
#   VESPA project. These software components have their own license. Please see
#   ./spec2nii/GE/VESPA_LICENSE.
#
# Per LICENSE, other code is adapted from nmrglue, also under a BSD-3-Clause
# license:
#   This software includes third party open source software from the nmrglue
#   project. These software components have their own license which is
#   reproduced here and in the relevant source code files
#   (spec2nii/fileiobase.py and spec2nii/varian.py).
License:        BSD-3-Clause
URL:            https://github.com/wtclarke/spec2nii
Source:         %{pypi_source spec2nii}

# Man pages hand-written for Fedora in groff_man(7) format based on --help
Source100:      spec2nii.1
Source101:      spec2nii-auto.1
Source102:      spec2nii-twix.1
Source103:      spec2nii-dicom.1
Source104:      spec2nii-rda.1
Source105:      spec2nii-uih.1
Source106:      spec2nii-philips.1
Source107:      spec2nii-philips_dl.1
Source108:      spec2nii-philips_dcm.1
Source109:      spec2nii-ge.1
Source110:      spec2nii-text.1
Source111:      spec2nii-jmrui.1
Source112:      spec2nii-raw.1
Source113:      spec2nii-bruker.1
Source114:      spec2nii-varian.1
Source115:      spec2nii-anon.1
Source116:      spec2nii-dump.1
Source117:      spec2nii-extract.1
Source118:      spec2nii-insert.1

BuildArch:      noarch

# Per spec2nii/GE/VESPA_LICENSE, “elements of ge_pfile.py, ge_read_pfile.py and
# ge_hdr_fields.py are taken from or adapted from the VESPA project.”
# Similarly, per LICENSE, “This software includes third party open source
# software from the nmrglue project.” We assess that neither case of selective
# copying and adaptation rises to the level of a bundled dependency.

BuildRequires:  python3-devel

%py_provides python3-spec2nii

%description
A program for multi-format conversion of in vivo MRS to the NIfTI-MRS format
(https://github.com/wexeee/mrs_nifti_standard).

This program was inspired by the imaging DICOM to NIfTI converter dcm2niix,
developed by Chris Rorden. All MRS(I) orientations are tested with images
converted using dcm2niix.


%prep
%autosetup
# Upstream pins scipy to a particular minor release. We cannot respect this.
# (Currently, our scipy is older than the pinned one, so we cannot convert it
# to a lower-bound, either.)
sed -r -i 's/(scipy)==.*/\1/' requirements.yml


%generate_buildrequires
%pyproject_buildrequires


%build
%pyproject_wheel


%install
%pyproject_install
%pyproject_save_files -l spec2nii

install -t '%{buildroot}%{_mandir}/man1' -D -p -m 0644 \
    '%{SOURCE100}' '%{SOURCE101}' '%{SOURCE102}' '%{SOURCE103}' \
    '%{SOURCE104}' '%{SOURCE105}' '%{SOURCE106}' '%{SOURCE107}' \
    '%{SOURCE108}' '%{SOURCE109}' '%{SOURCE110}' '%{SOURCE111}' \
    '%{SOURCE112}' '%{SOURCE113}' '%{SOURCE114}' '%{SOURCE115}' \
    '%{SOURCE116}' '%{SOURCE117}' '%{SOURCE118}'


%check
%pyproject_check_import
%if %{with tests}
%pytest
%endif


%files -f %{pyproject_files}
%{_bindir}/spec2nii
%{_mandir}/man1/spec2nii.1*
%{_mandir}/man1/spec2nii-*.1*


%changelog
%autochangelog